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Simulations

Quantum Simulations

Harnessing quantum mechanics for the next frontier in drug discovery

What Are Quantum Simulations?

Quantum simulations replicate atomic and molecular interactions by leveraging the principles of quantum mechanics. They model electron behavior and predict how molecules behave in various states — something classical computers struggle to do accurately for complex molecules.

Quantum Circuit

Sample Quantum Circuit (H₂ Molecule)

This sample simulates the Hydrogen molecule and predicts its molecular energy.

      # PennyLane Example: Simulating H₂ Molecule
            import pennylane as qml
            from pennylane import numpy as np

            symbols = ["H", "H"]
            coordinates = np.array([[0.0, 0.0, 0.0], [0.0, 0.0, 0.74]])

            H, qubits = qml.qchem.molecular_hamiltonian(symbols, coordinates)
            dev = qml.device("default.qubit", wires=qubits)

            @qml.qnode(dev)
            def circuit(params):
                qml.templates.StronglyEntanglingLayers(params, wires=range(qubits))
                return qml.expval(H)

            params = np.random.random((1, qubits, 3))
            print("Energy:", circuit(params))
    
    

Molecule Case Studies

Explore how Astra Vida simulates molecules using quantum circuits. Click on each to see the code.

Hydrogen (H₂)

Tests Hamiltonian simulation accuracy.

Water (H₂O)

Tests triatomic geometries and quantum energy estimation.

Methane (CH₄)

Simulates complex tetrahedral systems.

Oxygen (O₂)

Open-shell molecule with spin handling.

Quantum vs Classical

Quantum vs Classical Simulations

  • Classical simulations scale poorly with molecular complexity
  • Quantum simulations offer exponential speed-up for complex systems
  • Quantum methods solve many-body Schrödinger equations natively

Astra Vida Simulation Workflow

1. Molecule Input

Users specify target molecules (e.g., malaria drugs) and bond structures.

2. Hamiltonian Generation

We build quantum operators representing the molecular system’s energy.

3. Quantum Circuit

Custom variational circuits estimate ground-state energy configurations.

4. Optimization

Classical optimizers refine circuit parameters to minimize energy output.

Rediscovering Known Drugs

We validate our system by rediscovering approved compounds using quantum simulations.

  • Artemisinin (Malaria)
  • Azidothymidine (HIV)
  • Doxorubicin (Cancer)

These simulations serve as proof-of-concept for our platform’s predictive power before we proceed to novel drug candidates.

Our Tech Stack

PennyLane
Qiskit / Cirq
IBM Quantum
Google Sycamore

Simulation Use Cases in Drug Discovery

Explore how Astra Vida leverages quantum simulations to accelerate each critical stage of drug development.

Target Identification

Simulate biomolecular interactions to pinpoint high-value protein targets linked to specific diseases.

Lead Optimization

Use VQE and quantum chemistry to fine-tune molecular structures for maximum binding efficiency.

Toxicity Prediction

Predict potential toxicity of candidate compounds using quantum-based energy profiling and AI models.

Binding Affinity

Quantify how tightly a drug binds to its target using quantum eigenvalue estimations and molecular modeling.

Behind the Science

Explore the quantum mechanics driving Astra Vida’s drug discovery system.

VQE is a hybrid quantum-classical algorithm used to find the ground state energy of a molecule. It variationally minimizes the expected value of the molecular Hamiltonian using parameterized quantum circuits. Astra Vida uses VQE to simulate complex molecular structures and predict stable drug configurations.

The molecular Hamiltonian encodes all the energy terms of a molecule: kinetic, electron-electron repulsion, and nuclear attraction. Astra Vida translates this into a quantum circuit representation for energy evaluation, forming the basis of our simulation engine.

These layers are used to build expressive quantum circuits. They apply entangling gates between qubits and rotation gates to allow the circuit to learn complex correlations in quantum data — critical for capturing molecular behaviors.

A basis set is a collection of functions used to describe the orbitals of electrons in a molecule. Astra Vida uses the STO-3G minimal basis set as a starting point for efficient simulations, balancing accuracy and computational load.

API Reference

Access our Quantum Drug Discovery API for integration, simulation, and compound queries.

Predict Molecular Energy
POST /api/v1/simulate

Input molecule geometry and get back predicted ground-state energy.

Rediscovered Compounds
GET /api/v1/compounds

Retrieve a list of successfully simulated compounds and drugs.

Request Compound Simulation
POST /api/v1/request

Submit a compound structure or name for quantum evaluation.

Feedback & Custom Requests

Tell us what you think or suggest a new compound you'd like simulated.